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Publications

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2013
T. Hey, “Foreword”, in THE DATA BONANZA: Improving Knowledge Discovery for Science, Engineering and Business, M. Atkinson, Baxter, R., Brezany, P., Corcho, O., Galea, M., Parsons, M., Snelling, D., and van Hemert, J., Eds. John Wiley & Sons Ltd., 2013, p. xvii-xviii.
G. McGilvary and Oulevey, T., “The Implementation of OpenStack Cinder and Integration with NetApp and Ceph”, CERN, 2013.
F. Zhu, Rodríguez, D., Carpenter, T. K., Atkinson, M. P., and Wardlaw, J. M., “Lesion Area Detection Using Source Image Correlation Coefficient for CT Perfusion Imaging”, IEEE Journal of Biomedical and Health Informatics, vol. 17, no. 5, pp. 950 - 958, 2013.
Y. Tanimura, Filgueira, R., Kojima, I., and Atkinson, M. P., “MPI collective I/O based on advanced reservations to obtain performance guarantees from shared storage systems”, in CLUSTER, 2013.
D. Snelling, “Platforms for Data-Intensive Analysis”, in THE DATA BONANZA: Improving Knowledge Discovery for Science, Engineering and Business, M. Atkinson, Baxter, R. M., Brezany, P., Corcho, O., Galea, M., Parsons, M., Snelling, D., and van Hemert, J., Eds. John Wiley & Sons Ltd., 2013, pp. 197-201.
M. Atkinson, “Preface”, in THE DATA BONANZA: Improving Knowledge Discovery for Science, Engineering and Business, M. Atkinson, Baxter, R., Brezany, P., Corcho, O., Galea, M., Parsons, M., Snelling, D., and van Hemert, J., Eds. John Wiley & Sons Ltd., 2013, p. xix-xxviii.
O. Corcho and van Hemert, J., “Problem Solving in Data-Intensive Knowledge Discovery”, in THE DATA BONANZA: Improving Knowledge Discovery for Science, Engineering and Business, M. Atkinson, Baxter, R., Brezany, P., Corcho, O., Galea, M., Parsons, M., Snelling, D., and van Hemert, J., Eds. John Wiley & Sons Ltd., 2013, pp. 147-163.
A. Spinuso, Cheney, J., and Atkinson, M., “Provenance for seismological processing pipelines in a distributed streaming workflow”, in EDBT/ICDT Workshops, 2013.
A. Nuñez, Filgueira, R., and Merayo, M. G., “SANComSim: A Scalable, Adaptive and Non-intrusive Framework to Optimize Performance in Computational Science Applications”, in ICCS, 2013.
O. Corcho, “Sharing and Reuse in Knowledge Discovery”, in THE DATA BONANZA: Improving Knowledge Discovery for Science, Engineering and Business, M. Atkinson, Baxter, R., Brezany, P., Corcho, O., Galea, M., Parsons, M., Snelling, D., and van Hemert, J., Eds. John Wiley & Sons Ltd., 2013, pp. 181-192.
M. Carpené, Klampanos, I. A., Leong, S. Hoon, Casarotti, E., Danecek, P., Ferini, G., Gemünd, A., Krause, A., Krischer, L., Magnoni, F., Simon, M., Spinuso, A., Trani, L., Atkinson, M., Erbacci, G., Frank, A., Igel, H., Rietbrock, A., Schwichtenberg, H., and Vilotte, J. - P., “Towards Addressing CPU-Intensive Seismological Applications in Europe”, in International Supercomputing Conference, Leipzig, Germany, 2013.
K. Zutis, Trucco, E., Hubschman, J. P., Reed, D., Shah, S., and van Hemert, J., “Towards automatic detection of abnormal retinal capillaries in ultra-widefield-of-view retinal angiographic exams”, in Conf Proc IEEE Eng Med Biol Soc, 2013.
S. Herres-Pawlis, Balaskó, Á., Birkenheuer, G., Brinkmann, A., Gesing, S., Grunzke, R., Hoffmann, A., Kacsuk, P., Krüger, J., Packschies, L., Terstyansky, G., and Weingarten, N., “User-friendly workflows in quantum chemistry”, in IWSG 2013, Zurich, Switzerland, 2013.
G. McGilvary, Barker, A., Lloyd, A., and Atkinson, M., “V-BOINC: The Virtualization of BOINC”, in In Proceedings of the 13th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid 2013)., Delft, The Netherlands, 2013.
P. Missier, Belhajjame, K., and Cheney, J., “The W3C PROV family of specifications for modelling provenance metadata”, in EDBT, 2013.
S. Gesing, Web-based Science Gateways for Structural Bioinformatics. University of Tübingen, 2013.
2012
Y. Tanimura, Filgueira, R., Kojima, I., and Atkinson, M. P., “Abstract: Reservation-Based I/O Performance Guarantee for MPI-IO Applications Using Shared Storage Systems”, in SC Companion, 2012.
R. Filgueira, Nuñez, A., Fernandez, J., and Atkinson, M., “An adaptive, scalable, and portable technique for speeding up MPI-based applications”, in International European Conference on Parallel and Distributed Computing, Europar-2012, 2012.
F. Zhu, Carpenter, T., Rodríguez, D., Atkinson, M., and Wardlaw, J., “Computed Tomography Perfusion Imaging Denoising Using Gaussian Process Regression”, Physics in Medicine and Biology, 2012.
L. Bravo, Cheney, J., Fundulaki, I., and Segovia, R., “Consistency and repair for XML write-access control policies”, VLDB J., vol. 21, pp. 843-867, 2012.
U. A. Acar, Ahmed, A., Cheney, J., and Perera, R., “A Core Calculus for Provenance”, in POST, 2012.
R. Grunzke, Birkenheuer, G., Blunk, D., Breuers, S., Brinkmann, A., Gesing, S., Herres-Pawlis, S., Kohlbacher, O., Krüger, J., Kruse, M., Müller-Pfefferkorn, R., Schäfer, P., Schuller, B., Steinke, T., and Zink, A., “A Data Driven Science Gateway for Computational Workflows”, in UNICORE Summit 2012, 2012.
D. A. Dickie, Job, D., Rodríguez, D., Shenkin, S., and Wardlaw, J., “A databank, rather than statistical, model of normal ageing brain structure to indicate pathology”, in OHBM 2012, 2012.
M. P. Atkinson, Liew, C. S., Galea, M., Martin, P., Krause, A., Mouat, A., Corcho, O., and Snelling, D., “Data-Intensive Architecture for Scientific Knowledge Discovery”, Distributed and Parallel Databases, vol. 30, no. 5, pp. 307-324, 2012.
G. G. Castañè, Nuñez, A., Filgueira, R., and Carretero, J., “Dimensioning Scientific Computing Systems to Improve Performance of Map-Reduce based Applications”, in Procedia Computer Science, Proceedings of the International Conference on Computational Science, ICCS 2012, 2012.

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