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Publications

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2007
A. Voss, Mascord, M., Fraser, M., Jirotka, M., Procter, R., Halfpenny, P., Fergusson, D., Atkinson, M., Dunn, S., Blanke, T., Hughes, L., and Anderson, S., “e-Research Infrastructure Development and Community Engagement”, in All Hands Meeting 2007, Nottingham, UK, 2007.
M. Giacobini and van Hemert, J., “European Graduate Student Workshop on Evolutionary Computation”. Valencia, Spain, 2007.
C. Cotta and van Hemert, J., “Evolutionary Computation in Combinatorial Optimization, 7th European Conference”, Lecture Notes in Computer Science, vol. LNCS 4446. Springer, 2007.
M. Antonioletti, Atkinson, M., Chue Hong, N. P., Dobrzelecki, B., Hume, A. C., Jackson, M., Karasavvas, K., Krause, A., Schopf, J. M., T., S., and Theocharopoulos, E., “Grid Enabling Your Data Resources with OGSA-DAI”, in Applied Parallel Computing. State of the Art in Scientific Computing, 2007, vol. 4699, p. 799--808.
D. Robertson, Walton, C., Barker, A., Besana, P., Chen-Burger, Y., Hassan, F., Lambert, D., Li, G., McGinnis, J., Osman, N., Bundy, A., McNeill, F., van Harmelen, F., Sierra, C., and Giunchiglia, F., “Interaction as a Grounding for Peer to Peer Knowledge Sharing”, in Advances in Web Semantics, 2007, vol. 1.
S. Aitken and Chen, Y., “Managing the transition from OBO to OWL: The COBrA-CT Bio-Ontology Tools”, in UK e-Science Al l Hands Meeting 2007, Nottingham, UK, 2007.
A. Sanchez, Perez, M. S., Karasavvas, K., Herrero, P., and Perez, A., “MAPFS-DAI, an extension of OGSA-DAI based on a parallel file system”, Future Generation Computer Systems, vol. 23, p. 138--145, 2007.
A. Gyenesei, Wagner, U., Barkow-Oesterreicher, S., Stolte, E., and Schlapbach, R., “Mining co-regulated gene profiles for the detection of functional associations in gene expression data”, Bioinformatics, vol. 23, pp. 1927-1935, 2007.
J. I. van Hemert and Baldock, R. A., “Mining spatial gene expression data for association rules”, in Lecture Notes in Bioinformatics, 2007, p. 66--76.
S. Aitken, Chen, Y., and Bard, J., “OBO Explorer: An Editor for Open Biomedical Ontologies in OWL”, Bioinformatics, 2007.
M. Antonioletti, Hong, C. N. P., Hume, A. C., Jackson, M., Karasavvas, K., Krause, A., Schopf, J. M., Atkinson, M. P., Dobrzelecki, B., Illingworth, M., McDonnell, N., Parsons, M., and Theocharopoulous, E., “OGSA-DAI 3.0 - The What's and Whys”, in UK e-Science All Hands Meeting, 2007.
R. Filgueira, Singh, D. E., Isaila, F., Carretero, J., and Loureiro, A. G., “Optimization and evaluation of parallel I/O in BIPS3D parallel irregular application”, in IPDPS, 2007.
D. W. Walker, Atkinson, M. P., and Sommerville, I., “Special Issue: Selected Papers from the 2004 U.K. e-Science All Hands Meeting”, All Hands Meeting 2004, vol. 19. John Wiley & Sons Ltd, Nottingham, UK, pp. 129-131, 2007.
S. Newhouse, Schopf, J. M., Richards, A., and Atkinson, M. P., “Study of User Priorities for e-Infrastructure for e-Research (SUPER)”, in Proceedings of the UK e-Science All Hands Meeting, 2007.
L. Han, Asenov, A., Berry, D., Millar, C., Roy, G., Roy, S., Sinnott, R., and Stewart, G., “Towards a Grid-Enabled Simulation Framework for Nano-CMOS Electronics”, in 3rd IEEE International Conference on eScience and Grid Computing, Bangalore, India , 2007.
Y. Chen, Berry, D., and Dantressangle, P., “Transaction-Based Grid Database Replication”, in UK e-Science Al l Hands Meeting 2007, Nottingham, UK, 2007.
2006
R. {\"u}diger Berlich, Hardt, M., Kunze, M., Atkinson, M. P., and Fergusson, D., “EGEE: building a pan-European grid training organisation”, in ACSW Frontiers, 2006, pp. 105-111.
M. Giacobini and van Hemert, J., “European Graduate Student Workshop on Evolutionary Computation”. Budapest, Hungary, 2006.
J. I. van Hemert, “Evolving combinatorial problem instances that are difficult to solve”, Evolutionary Computation, vol. 14, p. 433--462, 2006.
D. Berry, Usmani, A., Torero, J., Tate, A., McLaughlin, S., Potter, S., Trew, A., Baxter, R., Bull, M., and Atkinson, M., “FireGrid: Integrated emergency response and fire safety engineering for the future built environment”, in All Hands Meeting 2005, Nottingham, UK, 2006.
M. Antonioletti, Atkinson, M., Hong, C. N., Dobrzelecki, B., Hume, A., Jackson, M., Karasavvas, K., Krause, A., Sugden, T., and Theocharopoulos, E., “Grid Enabling your Data Resources with OGSA-DAI”, in Workshop on State-of-the-Art in Scientific and Parallel Computing, 2006.
R. O. Sinnott, Bayer, M., Stell, A. J., and Koetsier, J., “Grid Infrastructures for Secure Access to and Use of Bioinformatics Data: Experiences from the BRIDGES Project”, in Proceedings of the First International Conference on Availability, Reliability and Security, ARES, Vienna, Austria, 2006, p. 950--957.
I. Juhos and van Hemert, J. I., “Improving Graph Colouring Algorithms and Heuristics Using a Novel Representation”, in Springer Lecture Notes on Computer Science, 2006, p. 123--134.
I. Juhos and van Hemert, J. I., “Increasing the efficiency of graph colouring algorithms with a representation based on vector operations”, Journal of Software, vol. 1, p. 24--33, 2006.
N. P. Chue Hong, Antonioletti, M., Karasavvas, K. A., and Atkinson, M., “Knowledge and Data Management in Grids, CoreGRID”, in Euro-Par'06 Proceedings of the CoreGRID 2006, UNICORE Summit 2006, Petascale Computational Biology and Bioinformatics conference on Parallel processing, vol. 4375, W. Lehner, Meyer, N., Streit, A., and Stewart, C., Eds. Berlin, Germany: Springer, 2006.

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