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Publications

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2012
G. G. Castañè, Nuñez, A., Filgueira, R., and Carretero, J., “Dimensioning Scientific Computing Systems to Improve Performance of Map-Reduce based Applications”, Procedia CS, vol. 9, pp. 226-235, 2012.
P. Martin, “Dispel Tutorial”, 2012.
L. De Ferrari, Aitken, S., van Hemert, J., and Goryanin, I., “EnzML: multi-label prediction of enzyme classes using InterPro signatures.”, BMC Bioinformatics, vol. 13, p. 61, 2012.
T. Schlemmer, Grunzke, R., Gesing, S., Krüger, J., Birkenheuer, G., Müller-Pfefferkorn, R., and Kohlbacher, O., “Generic User Management for Science Gateways via Virtual Organizations”, in EGI Technical Forum 2012, 2012.
S. Gesing, Glatard, T., Krüger, J., Olabarriaga, S. Delgado, Solomonides, T., Silverstein, J., Montagnat, J., Gaignard, A., and Krefting, D., Eds., “HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences”, vol. 175. IOS Press, 2012.
S. Gesing, Herres-Pawlis, S., Birkenheuer, G., Brinkmann, A., Grunzke, R., Kacsuk, P., Kohlbacher, O., Kozlovszky, M., Krüger, J., Müller-Pfefferkorn, R., Schäfer, P., and Steinke, T., “The MoSGrid Community - From National to International Scale”, in EGI Community Forum 2012, 2012.
G. Birkenheuer, Blunk, D., Breuers, S., Brinkmann, A., Fels, G., Gesing, S., Grunzke, R., Herres-Pawlis, S., Kohlbacher, O., Krüger, J., Packschies, L., Schäfer, P., Schuller, B., Schuster, J., Steinke, T., Fabri, A. Szikszay, Wewior, M., Müller-Pfefferkorn, R., and Kohlbacher, O., “MoSGrid: Progress of Workflow driven Chemical Simulations”, in Grid Workflow Workshop 2011, 2012.
P. Anderson, Bijani, S., and Vichos, A., “Multi-agent Negotiation of Virtual Machine Migration Using the Lightweight Coordination Calculus”, in Agent and Multi-Agent Systems. Technologies and Applications, vol. 7327, G. Jezic, Kusek, M., Nguyen, N. - T., Howlett, R., and Jain, L., Eds. Springer Berlin / Heidelberg, 2012, pp. 124-133.
C. Allan, Burel, J. - M., Moore, J., Blackburn, C., Linkert, M., Loynton, S., MacDonald, D., and et al., “OMERO: flexible, model-driven data management for experimental biology”, NATURE METHODS, vol. 9, no. 3, pp. 245-253, 2012.
C. S. Liew, Optimisation of the enactment of fine-grained distributed data-intensive workflows. Edinburgh: The University of Edinburgh, 2012.
F. Zhu, Rodríguez, D., Carpenter, T., Atkinson, M., and Wardlaw, J., “Parallel perfusion imaging processing using GPGPU”, Computer Methods and Programs in Biomedicine, p. -, 2012.
F. Zhu, (PhD Thesis) Brain Perfusion Imaging - Performance and Accuracy. 2012.
J. Cheney, Finkelstein, A., Ludäscher, B., and Vansummeren, S., “Principles of Provenance (Dagstuhl Seminar 12091)”, Dagstuhl Reports, vol. 2, pp. 84-113, 2012.
P. T. Groth, Gil, Y., Cheney, J., and Miles, S., “Requirements for Provenance on the Web”, IJDC, vol. 7, pp. 39-56, 2012.
S. Bijani and Robertson, D., “A Review of Attacks and Security Approaches in Open Multi-agent Systems”. 2012.
S. Gesing, Herres-Pawlis, S., Birkenheuer, G., Brinkmann, A., Grunzke, R., Kacsuk, P., Kohlbacher, O., Kozlovszky, M., Krüger, J., Müller-Pfefferkorn, R., Schäfer, P., and Steinke, T., “A Science Gateway Getting Ready for Serving the International Molecular Simulation Community”, in Proceedings of Science, 2012.
I. A. Klampanos and Jose, J. M., “Searching in peer-to-peer networks ”, Computer Science Review (Elsevier), 2012.
A. Nuñez, Fernández, J., Filgueira, R., Carballeira, F. G., and Carretero, J., “SIMCAN: A flexible, scalable and expandable simulation platform for modelling and simulating distributed architectures and applications”, Simulation Modelling Practice and Theory, vol. 20, pp. 12-32, 2012.
S. Gesing, Grunzke, R., Krüger, J., Birkenheuer, G., Wewior, M., Schäfer, P., Schuller, B., Schuster, J., Herres-Pawlis, S., Breuers, S., Balaskó, Á., Kozlovszky, M., Fabri, A. S., Packschies, L., Kacsuk, P., Blunk, D., Steinke, T., Brinkmann, A., Fels, G., Müller-Pfefferkorn, R., Jäkel, R., and Kohlbacher, O., “A Single Sign-On Infrastructure for Science Gateways on a Use Case for Structural Bioinformatics”, Journal of Grid Computing, vol. 10, pp. 769-790, 2012.
N. Chatzinikolaou and Robertson, D., “The Use of Reputation as Noise-resistant Selection Bias in a Co-evolutionary Multi-agent System”, in Genetic and Evolutionary Computation Conference, Philadelphia, 2012.
S. Herres-Pawlis, Birkenheuer, G., Brinkmann, A., Gesing, S., Grunzke, R., Jäkel, R., Kohlbacher, O., Krüger, J., and Vieira, I. Dos Santos, “Workflow-enhanced conformational analysis of guanidine zinc complexes via a science gateway”, in HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences, 2012.
2011
A. O. Maghraby, “Automatic Agent Protocol Generation from Argumentation”, in 13th European Agent Systems Summer Schoo, 2011.
L. Han, van Hemert, J., and Baldock, R., “Automatically Identifying and Annotating Mouse Embryo Gene Expression Patterns”, Bioinformatics, vol. 27, pp. 1101–1107, 2011.
K. Smith-Miles and {van Hemert}, J. I., “Discovering the suitability of optimisation algorithms by learning from evolved instances”, Annals of Mathematics and Artificial Intelligence, vol. Online Fir, 2011.
P. Martin and Yaikhom, G., “DISPEL Reference Manual”, in Advanced Data Mining and Integration Research for Europe (ADMIRE), 2011.

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