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Publications

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Book
S. Gesing, Web-based Science Gateways for Structural Bioinformatics. University of Tübingen, 2013.
Conference Paper
R. Grunzke, Birkenheuer, G., Blunk, D., Breuers, S., Brinkmann, A., Gesing, S., Herres-Pawlis, S., Kohlbacher, O., Krüger, J., Kruse, M., Müller-Pfefferkorn, R., Schäfer, P., Schuller, B., Steinke, T., and Zink, A., “A Data Driven Science Gateway for Computational Workflows”, in UNICORE Summit 2012, 2012.
S. Gesing, Atkinson, M., Klampanos, I., Galea, M., Berthold, M. R., Barbera, R., Scardaci, D., Terstyanszky, G., Kiss, T., and Kacsuk, P., “The demand for consistent web-based workflow editors”, in Proceedings of the 8th Workshop on Workflows in Support of Large-Scale Science, New York, NY, USA, 2013.
T. Schlemmer, Grunzke, R., Gesing, S., Krüger, J., Birkenheuer, G., Müller-Pfefferkorn, R., and Kohlbacher, O., “Generic User Management for Science Gateways via Virtual Organizations”, in EGI Technical Forum 2012, 2012.
S. Gesing, Grunzke, R., Balaskó, Á., Birkenheuer, G., Blunk, D., Breuers, S., Brinkmann, A., Fels, G., Herres-Pawlis, S., Kacsuk, P., Kozlovszky, M., Krüger, J., Packschies, L., Schäfer, P., Schuller, B., Schuster, J., Steinke, T., Fabri, A. Szikszay, Wewior, M., Müller-Pfefferkorn, R., and Kohlbacher, O., “Granular Security for a Science Gateway in Structural Bioinformatics”, in Proceedings of the International Workshop on Science Gateways for Life Sciences (IWSG-Life 2011), 2011.
G. Birkenheuer, Breuers, S., Brinkmann, A., Blunk, D., Fels, G., Gesing, S., Herres-Pawlis, S., Kohlbacher, O., Krüger, J., and Packschies, L., “Grid-Workflows in Molecular Science”, in Software Engineering 2010, Grid Workflow Workshop, 2010.
S. Gesing, Herres-Pawlis, S., Birkenheuer, G., Brinkmann, A., Grunzke, R., Kacsuk, P., Kohlbacher, O., Kozlovszky, M., Krüger, J., Müller-Pfefferkorn, R., Schäfer, P., and Steinke, T., “The MoSGrid Community - From National to International Scale”, in EGI Community Forum 2012, 2012.
M. Wewior, Packschies, L., Blunk, D., Wickeroth, D., Warzecha, K., Herres-Pawlis, S., Gesing, S., Breuers, S., Krüger, J., Birkenheuer, G., and Lang, U., “The MoSGrid Gaussian Portlet – Technologies for the Implementation of Portlets for Molecular Simulations”, in Proceedings of the International Workshop on Science Gateways (IWSG10), 2010.
G. Birkenheuer, Blunk, D., Breuers, S., Brinkmann, A., Fels, G., Gesing, S., Grunzke, R., Herres-Pawlis, S., Kohlbacher, O., Krüger, J., Packschies, L., Schäfer, P., Schuller, B., Schuster, J., Steinke, T., Fabri, A. Szikszay, Wewior, M., Müller-Pfefferkorn, R., and Kohlbacher, O., “MoSGrid: Progress of Workflow driven Chemical Simulations”, in Grid Workflow Workshop 2011, 2012.
S. Gesing, Kohlbacher, O., and van Hemert, J. I., “Portals for Life Sciences—a Brief Introduction”, in Proceedings of the IWPLS09 International Workshop on Portals for Life Sciences, 2009.
S. Gesing, Kacsuk, P., Kozlovszky, M., Birkenheuer, G., Blunk, D., Breuers, S., Brinkmann, A., Fels, G., Grunzke, R., Herres-Pawlis, S., Krüger, J., Packschies, L., Müller-Pfefferkorn, R., Schäfer, P., Steinke, T., Fabri, A. Szikszay, Warzecha, K., Wewior, M., and Kohlbacher, O., “A Science Gateway for Molecular Simulations”, in EGI User Forum 2011, 2011.
S. Gesing, Herres-Pawlis, S., Birkenheuer, G., Brinkmann, A., Grunzke, R., Kacsuk, P., Kohlbacher, O., Kozlovszky, M., Krüger, J., Müller-Pfefferkorn, R., Schäfer, P., and Steinke, T., “A Science Gateway Getting Ready for Serving the International Molecular Simulation Community”, in Proceedings of Science, 2012.
S. Gesing, van Hemert, J., Koetsier, J., Bertsch, A., and Kohlbacher, O., “TOPP goes Rapid”, in Cluster Computing and the Grid, IEEE International Symposium on, Los Alamitos, CA, USA, 2010, p. 598--599.
S. Herres-Pawlis, Balaskó, Á., Birkenheuer, G., Brinkmann, A., Gesing, S., Grunzke, R., Hoffmann, A., Kacsuk, P., Krüger, J., Packschies, L., Terstyansky, G., and Weingarten, N., “User-friendly workflows in quantum chemistry”, in IWSG 2013, Zurich, Switzerland, 2013.
S. Gesing, Marton, I., Birkenheuer, G., Schuller, B., Grunzke, R., Krüger, J., Breuers, S., Blunk, D., Fels, G., Packschies, L., Brinkmann, A., Kohlbacher, O., and Kozlovszky, M., “Workflow Interoperability in a Grid Portal for Molecular Simulations”, in Proceedings of the International Workshop on Science Gateways (IWSG10), 2010.
S. Herres-Pawlis, Birkenheuer, G., Brinkmann, A., Gesing, S., Grunzke, R., Jäkel, R., Kohlbacher, O., Krüger, J., and Vieira, I. Dos Santos, “Workflow-enhanced conformational analysis of guanidine zinc complexes via a science gateway”, in HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences, 2012.
Conference Proceedings
S. Gesing, Glatard, T., Krüger, J., Olabarriaga, S. Delgado, Solomonides, T., Silverstein, J., Montagnat, J., Gaignard, A., and Krefting, D., Eds., “HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences”, vol. 175. IOS Press, 2012.
S. Gesing and van Hemert, J. I., “Proceedings of the 1st International Workshop on Portals for Life Sciences”, IWPLS09 International Workshop on Portals for Life Sciences. e-Science Institute, Edinburgh, UK, 2009.
Journal Article
K. Schneeberger, Hagmann, J., Ossowski, S., Warthmann, N., Gesing, S., Kohlbacher, O., and Weigel, D., “Simultaneous alignment of short reads against multiple genomes”, Genome Biol, vol. 10, p. R98, 2009.
S. Gesing, Grunzke, R., Krüger, J., Birkenheuer, G., Wewior, M., Schäfer, P., Schuller, B., Schuster, J., Herres-Pawlis, S., Breuers, S., Balaskó, Á., Kozlovszky, M., Fabri, A. S., Packschies, L., Kacsuk, P., Blunk, D., Steinke, T., Brinkmann, A., Fels, G., Müller-Pfefferkorn, R., Jäkel, R., and Kohlbacher, O., “A Single Sign-On Infrastructure for Science Gateways on a Use Case for Structural Bioinformatics”, Journal of Grid Computing, vol. 10, pp. 769-790, 2012.
S. Gesing, van Hemert, J., Kacsuk, P., and Kohlbacher, O., “Special Issue: Portals for life sciences---Providing intuitive access to bioinformatic tools”, Concurrency and Computation: Practice and Experience, vol. 23, no. 23, p. 223--234, 2011.

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