TY - CONF T1 - The demand for consistent web-based workflow editors T2 - Proceedings of the 8th Workshop on Workflows in Support of Large-Scale Science Y1 - 2013 A1 - Gesing, Sandra A1 - Atkinson, Malcolm A1 - Klampanos, Iraklis A1 - Galea, Michelle A1 - Berthold, Michael R. A1 - Barbera, Roberto A1 - Scardaci, Diego A1 - Terstyanszky, Gabor A1 - Kiss, Tamas A1 - Kacsuk, Peter KW - web-based workflow editors KW - workflow composition KW - workflow interoperability KW - workflow languages and concepts JF - Proceedings of the 8th Workshop on Workflows in Support of Large-Scale Science PB - ACM CY - New York, NY, USA SN - 978-1-4503-2502-8 UR - http://doi.acm.org/10.1145/2534248.2534260 ER - TY - CONF T1 - User-friendly workflows in quantum chemistry T2 - IWSG 2013 Y1 - 2013 A1 - Herres-Pawlis, Sonja A1 - Balaskó, Ákos A1 - Birkenheuer, Georg A1 - Brinkmann, André A1 - Gesing, Sandra A1 - Grunzke, Richard A1 - Hoffmann, Alexander A1 - Kacsuk, Peter A1 - Krüger, Jens A1 - Packschies, Lars A1 - Terstyansky, Gabor A1 - Weingarten, Noam JF - IWSG 2013 PB - CEUR Workshop Proceedings CY - Zurich, Switzerland UR - http://ceur-ws.org/Vol-993/paper14.pdf ER - TY - BOOK T1 - Web-based Science Gateways for Structural Bioinformatics Y1 - 2013 A1 - Gesing, Sandra PB - University of Tübingen UR - http://nbn-resolving.de/urn:nbn:de:bsz:21-opus-67822 ER - TY - CONF T1 - A Data Driven Science Gateway for Computational Workflows T2 - UNICORE Summit 2012 Y1 - 2012 A1 - Grunzke, Richard A1 - Birkenheuer, G. A1 - Blunk, D. A1 - Breuers, S. A1 - Brinkmann, A. A1 - Gesing, Sandra A1 - Herres-Pawlis, S A1 - Kohlbacher, O. A1 - Krüger, J. A1 - Kruse, M. A1 - Müller-Pfefferkorn, R. A1 - Schäfer, P. A1 - Schuller, B. A1 - Steinke, T. A1 - Zink, A. JF - UNICORE Summit 2012 ER - TY - CONF T1 - Generic User Management for Science Gateways via Virtual Organizations T2 - EGI Technical Forum 2012 Y1 - 2012 A1 - Schlemmer, Tobias A1 - Grunzke, Richard A1 - Gesing, Sandra A1 - Krüger, Jens A1 - Birkenheuer, Georg A1 - Müller-Pfefferkorn, Ralph A1 - Kohlbacher, Oliver JF - EGI Technical Forum 2012 ER - TY - Generic T1 - HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences Y1 - 2012 ED - Gesing, Sandra ED - Glatard, Tristan ED - Krüger, Jens ED - Delgado Olabarriaga, Silvia ED - Solomonides, Tony ED - Silverstein, J. ED - Montagnat, J. ED - Gaignard, A. ED - Krefting, Dagmar PB - IOS Press VL - 175 ER - TY - CONF T1 - The MoSGrid Community - From National to International Scale T2 - EGI Community Forum 2012 Y1 - 2012 A1 - Gesing, Sandra A1 - Herres-Pawlis, Sonja A1 - Birkenheuer, Georg A1 - Brinkmann, André A1 - Grunzke, Richard A1 - Kacsuk, Peter A1 - Kohlbacher, Oliver A1 - Kozlovszky, Miklos A1 - Krüger, Jens A1 - Müller-Pfefferkorn, Ralph A1 - Schäfer, Patrick A1 - Steinke, Thomas JF - EGI Community Forum 2012 ER - TY - CONF T1 - MoSGrid: Progress of Workflow driven Chemical Simulations T2 - Grid Workflow Workshop 2011 Y1 - 2012 A1 - Birkenheuer, Georg A1 - Blunk, Dirk A1 - Breuers, Sebastian A1 - Brinkmann, André A1 - Fels, Gregor A1 - Gesing, Sandra A1 - Grunzke, Richard A1 - Herres-Pawlis, Sonja A1 - Kohlbacher, Oliver A1 - Krüger, Jens A1 - Packschies, Lars A1 - Schäfer, Patrick A1 - Schuller, B. A1 - Schuster, Johannes A1 - Steinke, Thomas A1 - Szikszay Fabri, Anna A1 - Wewior, Martin A1 - Müller-Pfefferkorn, Ralph A1 - Kohlbacher, Oliver JF - Grid Workflow Workshop 2011 PB - CEUR Workshop Proceedings ER - TY - CONF T1 - A Science Gateway Getting Ready for Serving the International Molecular Simulation Community T2 - Proceedings of Science Y1 - 2012 A1 - Gesing, Sandra A1 - Herres-Pawlis, Sonja A1 - Birkenheuer, Georg A1 - Brinkmann, André A1 - Grunzke, Richard A1 - Kacsuk, Peter A1 - Kohlbacher, Oliver A1 - Kozlovszky, Miklos A1 - Krüger, Jens A1 - Müller-Pfefferkorn, Ralph A1 - Schäfer, Patrick A1 - Steinke, Thomas JF - Proceedings of Science ER - TY - JOUR T1 - A Single Sign-On Infrastructure for Science Gateways on a Use Case for Structural Bioinformatics JF - Journal of Grid Computing Y1 - 2012 A1 - Gesing, Sandra A1 - Grunzke, Richard A1 - Krüger, Jens A1 - Birkenheuer, Georg A1 - Wewior, Martin A1 - Schäfer, Patrick A1 - Schuller, Bernd A1 - Schuster, Johannes A1 - Herres-Pawlis, Sonja A1 - Breuers, Sebastian A1 - Balaskó, Ákos A1 - Kozlovszky, Miklos A1 - Fabri, AnnaSzikszay A1 - Packschies, Lars A1 - Kacsuk, Peter A1 - Blunk, Dirk A1 - Steinke, Thomas A1 - Brinkmann, André A1 - Fels, Gregor A1 - Müller-Pfefferkorn, Ralph A1 - Jäkel, René A1 - Kohlbacher, Oliver KW - DCIs KW - Science gateway KW - security KW - Single sign-on KW - Structural bioinformatics VL - 10 UR - http://dx.doi.org/10.1007/s10723-012-9247-y ER - TY - CONF T1 - Workflow-enhanced conformational analysis of guanidine zinc complexes via a science gateway T2 - HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences Y1 - 2012 A1 - Herres-Pawlis, Sonja A1 - Birkenheuer, Georg A1 - Brinkmann, André A1 - Gesing, Sandra A1 - Grunzke, Richard A1 - Jäkel, René A1 - Kohlbacher, Oliver A1 - Krüger, Jens A1 - Dos Santos Vieira, Ines JF - HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences PB - IOS Press ER - TY - CONF T1 - Granular Security for a Science Gateway in Structural Bioinformatics T2 - Proceedings of the International Workshop on Science Gateways for Life Sciences (IWSG-Life 2011) Y1 - 2011 A1 - Gesing, Sandra A1 - Grunzke, Richard A1 - Balaskó, Ákos A1 - Birkenheuer, Georg A1 - Blunk, Dirk A1 - Breuers, Sebastian A1 - Brinkmann, André A1 - Fels, Gregor A1 - Herres-Pawlis, Sonja A1 - Kacsuk, Peter A1 - Kozlovszky, Miklos A1 - Krüger, Jens A1 - Packschies, Lars A1 - Schäfer, Patrick A1 - Schuller, Bernd A1 - Schuster, Johannes A1 - Steinke, Thomas A1 - Szikszay Fabri, Anna A1 - Wewior, Martin A1 - Müller-Pfefferkorn, Ralph A1 - Kohlbacher, Oliver JF - Proceedings of the International Workshop on Science Gateways for Life Sciences (IWSG-Life 2011) PB - CEUR Workshop Proceedings ER - TY - CONF T1 - A Science Gateway for Molecular Simulations T2 - EGI User Forum 2011 Y1 - 2011 A1 - Gesing, Sandra A1 - Kacsuk, Peter A1 - Kozlovszky, Miklos A1 - Birkenheuer, Georg A1 - Blunk, Dirk A1 - Breuers, Sebastian A1 - Brinkmann, André A1 - Fels, Gregor A1 - Grunzke, Richard A1 - Herres-Pawlis, Sonja A1 - Krüger, Jens A1 - Packschies, Lars A1 - Müller-Pfefferkorn, Ralph A1 - Schäfer, Patrick A1 - Steinke, Thomas A1 - Szikszay Fabri, Anna A1 - Warzecha, Klaus A1 - Wewior, Martin A1 - Kohlbacher, Oliver JF - EGI User Forum 2011 SN - 978 90 816927 1 7 ER - TY - JOUR T1 - Special Issue: Portals for life sciences---Providing intuitive access to bioinformatic tools JF - Concurrency and Computation: Practice and Experience Y1 - 2011 A1 - Gesing, Sandra A1 - van Hemert, J. A1 - Kacsuk, P. A1 - Kohlbacher, O. AB - The topic ‘Portals for life sciences’ includes various research fields, on the one hand many different topics out of life sciences, e.g. mass spectrometry, on the other hand portal technologies and different aspects of computer science, such as usability of user interfaces and security of systems. The main aspect about portals is to simplify the user’s interaction with computational resources that are concerted to a supported application domain. PB - Wiley VL - 23 IS - 23 ER - TY - CONF T1 - Grid-Workflows in Molecular Science T2 - Software Engineering 2010, Grid Workflow Workshop Y1 - 2010 A1 - Birkenheuer, Georg A1 - Breuers, Sebastian A1 - Brinkmann, André A1 - Blunk, Dirk A1 - Fels, Gregor A1 - Gesing, Sandra A1 - Herres-Pawlis, Sonja A1 - Kohlbacher, Oliver A1 - Krüger, Jens A1 - Packschies, Lars JF - Software Engineering 2010, Grid Workflow Workshop PB - GI-Edition - Lecture Notes in Informatics (LNI) ER - TY - CONF T1 - The MoSGrid Gaussian Portlet – Technologies for the Implementation of Portlets for Molecular Simulations T2 - Proceedings of the International Workshop on Science Gateways (IWSG10) Y1 - 2010 A1 - Wewior, Martin A1 - Packschies, Lars A1 - Blunk, Dirk A1 - Wickeroth, D. A1 - Warzecha, Klaus A1 - Herres-Pawlis, Sonja A1 - Gesing, Sandra A1 - Breuers, Sebastian A1 - Krüger, Jens A1 - Birkenheuer, Georg A1 - Lang, Ulrich ED - Barbera, Roberto ED - Andronico, Giuseppe ED - La Rocca, Giuseppe JF - Proceedings of the International Workshop on Science Gateways (IWSG10) PB - Consorzio COMETA ER - TY - CONF T1 - TOPP goes Rapid T2 - Cluster Computing and the Grid, IEEE International Symposium on Y1 - 2010 A1 - Gesing, Sandra A1 - van Hemert, Jano A1 - Jos Koetsier A1 - Bertsch, Andreas A1 - Kohlbacher, Oliver AB - Proteomics, the study of all the proteins contained in a particular sample, e.g., a cell, is a key technology in current biomedical research. The complexity and volume of proteomics data sets produced by mass spectrometric methods clearly suggests the use of grid-based high-performance computing for analysis. TOPP and OpenMS are open-source packages for proteomics data analysis; however, they do not provide support for Grid computing. In this work we present a portal interface for high-throughput data analysis with TOPP. The portal is based on Rapid, a tool for efficiently generating standardized portlets for a wide range of applications. The web-based interface allows the creation and editing of user-defined pipelines and their execution and monitoring on a Grid infrastructure. The portal also supports several file transfer protocols for data staging. It thus provides a simple and complete solution to high-throughput proteomics data analysis for inexperienced users through a convenient portal interface. JF - Cluster Computing and the Grid, IEEE International Symposium on PB - IEEE Computer Society CY - Los Alamitos, CA, USA SN - 978-0-7695-4039-9 ER - TY - CONF T1 - Workflow Interoperability in a Grid Portal for Molecular Simulations T2 - Proceedings of the International Workshop on Science Gateways (IWSG10) Y1 - 2010 A1 - Gesing, Sandra A1 - Marton, Istvan A1 - Birkenheuer, Georg A1 - Schuller, Bernd A1 - Grunzke, Richard A1 - Krüger, Jens A1 - Breuers, Sebastian A1 - Blunk, Dirk A1 - Fels, Gregor A1 - Packschies, Lars A1 - Brinkmann, André A1 - Kohlbacher, Oliver A1 - Kozlovszky, Miklos JF - Proceedings of the International Workshop on Science Gateways (IWSG10) PB - Consorzio COMETA ER - TY - CONF T1 - Portals for Life Sciences—a Brief Introduction T2 - Proceedings of the IWPLS09 International Workshop on Portals for Life Sciences Y1 - 2009 A1 - Gesing, Sandra A1 - Kohlbacher, O. A1 - van Hemert, J. I. AB - The topic ”‘Portals for Life Sciences”’ includes various research fields, on the one hand many different topics out of life sciences, e.g. mass spectrometry, on the other hand portal technologies and different aspects of computer science, such as usability of user interfaces and security of systems. The main aspect about portals is to simplify the user’s interaction with computational resources which are concer- ted to a supported application domain. JF - Proceedings of the IWPLS09 International Workshop on Portals for Life Sciences T3 - CEUR Workshop Proceedings UR - http://ceur-ws.org/Vol-513/paper01.pdf ER - TY - Generic T1 - Proceedings of the 1st International Workshop on Portals for Life Sciences T2 - IWPLS09 International Workshop on Portals for Life Sciences Y1 - 2009 A1 - Gesing, Sandra A1 - van Hemert, Jano I. JF - IWPLS09 International Workshop on Portals for Life Sciences T3 - CEUR Workshop Proceedings CY - e-Science Institute, Edinburgh, UK UR - http://ceur-ws.org/Vol-513 ER - TY - JOUR T1 - Simultaneous alignment of short reads against multiple genomes JF - Genome Biol Y1 - 2009 A1 - Schneeberger, Korbinian A1 - Hagmann, Jörg A1 - Ossowski, Stephan A1 - Warthmann, Norman A1 - Gesing, Sandra A1 - Kohlbacher, Oliver A1 - Weigel, Detlef VL - 10 UR - http://www.biomedsearch.com/nih/Simultaneous-alignment-short-reads-against/19761611.html ER -