Edinburgh Data-Intensive Research - Screen capture

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Screencast:A Rapid portal for computational chemistry on HECToR, the UK-national academic supercomputer

Jano.van.Hemert — Fri, 13 Aug 2010 11:30:49 +0000

Below a screencast where Rapid was used to develop a portal for the UK-national academic supercomputer HECToR. The portal shows how to setup an advanced compute job involving computational chemistry. You need Flash installed in the browser to watch the video below. Click here for a large version

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Data-intensive computing

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Screencast: Rapid Portal for real time geophysical experiments

Jano.van.Hemert — Mon, 31 May 2010 15:38:28 +0000

Below a screencast of the first prototype of the scientific gateway for real time geophysical experiments. This portal was created using Rapid.

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Data-intensive computing

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RapidGeo

Screencast: annotating embryo models on-line in a web browser

Jano.van.Hemert — Tue, 09 Feb 2010 15:00:44 +0000

Screencast of a prototype for the JISC-funded project "Next Generation Embryology" where biologists can annotate 3D objects that represent models of mouse and human embryos with arbitrary bits of information held in a DSpace repository. Here we show what the interface looks like.

The idea and architecture is very similar to how Google Maps allows annotating the earth; here the Edinburgh Mouse Atlas provides the model and the anatomical annotation---similar to maps on the earth. This new system then allows anyone to overlay their own information on top of these models.

It was developed by Gagarine Yaikhom at the School of Informatics of the University of Edinburgh, UK in conjunction with Institute for Human Genetics of Newcastle University, UK. It was built on top of a browser-based image viewer developed at the Human Genetics Unit of the Medical Research Council of the UK.

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NextGenerationEmbryology

Screencast: Rapid Portal for the Open Microscopy Environment

Jano.van.Hemert — Tue, 08 Dec 2009 17:30:45 +0000

We show a quick prototype where Rapid is integrated with the Open Microscopy Environment developed in Dundee (http://www.openmicroscopy.org/) to allow analysis and visualisation of microscopy images on remote compute resources.

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Screencast: Installation of Rapid using LifeRay as the portal framework

Jano.van.Hemert — Tue, 01 Dec 2009 14:47:28 +0000

We show a 2-minute screencast of the installation of Rapid that includes LifeRay as the portal. Shows how to get the basic "Hello World!" portlet gets installed into the portal. You need Flash installed in the browser to watch the video below. Click here for a large version

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Screencast: Rapid Portals for Seismological Waveform Data

Jano.van.Hemert — Thu, 19 Nov 2009 15:44:33 +0000

Welcome to the RapidSeis demo. This portal was created using Rapid and enables the use of Seismic Data eXplorer within the web portal of the Network of Research Infrastructures for European Seismology.

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JISC:

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Screencast: Rapid Portal for Brain Imaging

Jano.van.Hemert — Thu, 06 Aug 2009 07:57:56 +0000

We show a screencast of an example portal created using Rapid, which enables perfusion imaging in the context of brain imaging for stroke. To see this demo you require Flash to be installed. Perfusion imaging allows locating which parts of the brain are affected by a stroke in terms of oxygen deprivation.

Higher resolutions and other file formats can be found at http://forge.nesc.ac.uk/project/showfiles.php?group_id=87&release_id=268

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Screencast: Rapid Portal for Computational Chemistry Students

Jano.van.Hemert — Fri, 06 Mar 2009 17:25:36 +0000

We show a screencast of an example portal created using Rapid, which allows computational chemistry students to perform exercises using Gaussian 03. To see this demo you require Flash to be installed.

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Screencast: Rapid Delivers a Custom Portal for the EaStCHEM Project

Jano.van.Hemert — Wed, 13 Aug 2008 12:59:40 +0000

We show a screencast of a portlet created for the EaStChem project, which is the premier Chemistry research school for Chemistry in Scotland and one of the largest in the UK, with around 500 researchers. The portlet allows chemists to run the most popular simulation software Gaussian 03 and visualises their results in 3D through the use of JMol. To see this demo you require Flash to be installed.

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