TY  - CONF
T1  - Generic User Management for Science Gateways via Virtual Organizations
T2  - EGI Technical Forum 2012
Y1  - 2012
A1  - Schlemmer, Tobias
A1  - Grunzke, Richard
A1  - Gesing, Sandra
A1  - Krüger, Jens
A1  - Birkenheuer, Georg
A1  - Müller-Pfefferkorn, Ralph
A1  - Kohlbacher, Oliver
JF  - EGI Technical Forum 2012
ER  - 

TY  - CONF
T1  - The MoSGrid Community - From National to International Scale
T2  - EGI Community Forum 2012
Y1  - 2012
A1  - Gesing, Sandra
A1  - Herres-Pawlis, Sonja
A1  - Birkenheuer, Georg
A1  - Brinkmann, André
A1  - Grunzke, Richard
A1  - Kacsuk, Peter
A1  - Kohlbacher, Oliver
A1  - Kozlovszky, Miklos
A1  - Krüger, Jens
A1  - Müller-Pfefferkorn, Ralph
A1  - Schäfer, Patrick
A1  - Steinke, Thomas
JF  - EGI Community Forum 2012
ER  - 

TY  - CONF
T1  - MoSGrid: Progress of Workflow driven Chemical Simulations
T2  - Grid Workflow Workshop 2011
Y1  - 2012
A1  - Birkenheuer, Georg
A1  - Blunk, Dirk
A1  - Breuers, Sebastian
A1  - Brinkmann, André
A1  - Fels, Gregor
A1  - Gesing, Sandra
A1  - Grunzke, Richard
A1  - Herres-Pawlis, Sonja
A1  - Kohlbacher, Oliver
A1  - Krüger, Jens
A1  - Packschies, Lars
A1  - Schäfer, Patrick
A1  - Schuller, B.
A1  - Schuster, Johannes
A1  - Steinke, Thomas
A1  - Szikszay Fabri, Anna
A1  - Wewior, Martin
A1  - Müller-Pfefferkorn, Ralph
A1  - Kohlbacher, Oliver
JF  - Grid Workflow Workshop 2011
PB  - CEUR Workshop Proceedings
ER  - 

TY  - CONF
T1  - A Science Gateway Getting Ready for Serving the International Molecular Simulation Community
T2  - Proceedings of Science
Y1  - 2012
A1  - Gesing, Sandra
A1  - Herres-Pawlis, Sonja
A1  - Birkenheuer, Georg
A1  - Brinkmann, André
A1  - Grunzke, Richard
A1  - Kacsuk, Peter
A1  - Kohlbacher, Oliver
A1  - Kozlovszky, Miklos
A1  - Krüger, Jens
A1  - Müller-Pfefferkorn, Ralph
A1  - Schäfer, Patrick
A1  - Steinke, Thomas
JF  - Proceedings of Science
ER  - 

TY  - JOUR
T1  - A Single Sign-On Infrastructure for Science Gateways on a Use Case for Structural Bioinformatics
JF  - Journal of Grid Computing
Y1  - 2012
A1  - Gesing, Sandra
A1  - Grunzke, Richard
A1  - Krüger, Jens
A1  - Birkenheuer, Georg
A1  - Wewior, Martin
A1  - Schäfer, Patrick
A1  - Schuller, Bernd
A1  - Schuster, Johannes
A1  - Herres-Pawlis, Sonja
A1  - Breuers, Sebastian
A1  - Balaskó, Ákos
A1  - Kozlovszky, Miklos
A1  - Fabri, AnnaSzikszay
A1  - Packschies, Lars
A1  - Kacsuk, Peter
A1  - Blunk, Dirk
A1  - Steinke, Thomas
A1  - Brinkmann, André
A1  - Fels, Gregor
A1  - Müller-Pfefferkorn, Ralph
A1  - Jäkel, René
A1  - Kohlbacher, Oliver
KW  - DCIs
KW  - Science gateway
KW  - security
KW  - Single sign-on
KW  - Structural bioinformatics
VL  - 10
UR  - http://dx.doi.org/10.1007/s10723-012-9247-y
ER  - 

TY  - CONF
T1  - Workflow-enhanced conformational analysis of guanidine zinc complexes via a science gateway
T2  - HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences
Y1  - 2012
A1  - Herres-Pawlis, Sonja
A1  - Birkenheuer, Georg
A1  - Brinkmann, André
A1  - Gesing, Sandra
A1  - Grunzke, Richard
A1  - Jäkel, René
A1  - Kohlbacher, Oliver
A1  - Krüger, Jens
A1  - Dos Santos Vieira, Ines
JF  - HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences
PB  - IOS Press
ER  - 

TY  - CONF
T1  - Granular Security for a Science Gateway in Structural Bioinformatics
T2  - Proceedings of the International Workshop on Science Gateways for Life Sciences (IWSG-Life 2011)
Y1  - 2011
A1  - Gesing, Sandra
A1  - Grunzke, Richard
A1  - Balaskó, Ákos
A1  - Birkenheuer, Georg
A1  - Blunk, Dirk
A1  - Breuers, Sebastian
A1  - Brinkmann, André
A1  - Fels, Gregor
A1  - Herres-Pawlis, Sonja
A1  - Kacsuk, Peter
A1  - Kozlovszky, Miklos
A1  - Krüger, Jens
A1  - Packschies, Lars
A1  - Schäfer, Patrick
A1  - Schuller, Bernd
A1  - Schuster, Johannes
A1  - Steinke, Thomas
A1  - Szikszay Fabri, Anna
A1  - Wewior, Martin
A1  - Müller-Pfefferkorn, Ralph
A1  - Kohlbacher, Oliver
JF  - Proceedings of the International Workshop on Science Gateways for Life Sciences (IWSG-Life 2011)
PB  - CEUR Workshop Proceedings
ER  - 

TY  - CONF
T1  - A Science Gateway for Molecular Simulations
T2  - EGI User Forum 2011
Y1  - 2011
A1  - Gesing, Sandra
A1  - Kacsuk, Peter
A1  - Kozlovszky, Miklos
A1  - Birkenheuer, Georg
A1  - Blunk, Dirk
A1  - Breuers, Sebastian
A1  - Brinkmann, André
A1  - Fels, Gregor
A1  - Grunzke, Richard
A1  - Herres-Pawlis, Sonja
A1  - Krüger, Jens
A1  - Packschies, Lars
A1  - Müller-Pfefferkorn, Ralph
A1  - Schäfer, Patrick
A1  - Steinke, Thomas
A1  - Szikszay Fabri, Anna
A1  - Warzecha, Klaus
A1  - Wewior, Martin
A1  - Kohlbacher, Oliver
JF  - EGI User Forum 2011
SN  - 978 90 816927 1 7
ER  - 

TY  - CONF
T1  - Grid-Workflows in Molecular Science
T2  - Software Engineering 2010, Grid Workflow Workshop
Y1  - 2010
A1  - Birkenheuer, Georg
A1  - Breuers, Sebastian
A1  - Brinkmann, André
A1  - Blunk, Dirk
A1  - Fels, Gregor
A1  - Gesing, Sandra
A1  - Herres-Pawlis, Sonja
A1  - Kohlbacher, Oliver
A1  - Krüger, Jens
A1  - Packschies, Lars
JF  - Software Engineering 2010, Grid Workflow Workshop
PB  - GI-Edition - Lecture Notes in Informatics (LNI)
ER  - 

TY  - CONF
T1  - TOPP goes Rapid
T2  - Cluster Computing and the Grid, IEEE International Symposium on
Y1  - 2010
A1  - Gesing, Sandra
A1  - van Hemert, Jano
A1  - Jos Koetsier
A1  - Bertsch, Andreas
A1  - Kohlbacher, Oliver
AB  - Proteomics, the study of all the proteins contained in a particular sample, e.g., a cell, is a key technology in current biomedical research. The complexity and volume of proteomics data sets produced by mass spectrometric methods clearly suggests the use of grid-based high-performance computing for analysis. TOPP and OpenMS are open-source packages for proteomics data analysis; however, they do not provide support for Grid computing. In this work we present a portal interface for high-throughput data analysis with TOPP. The portal is based on Rapid, a tool for efficiently generating standardized portlets for a wide range of applications. The web-based interface allows the creation and editing of user-defined pipelines and their execution and monitoring on a Grid infrastructure. The portal also supports several file transfer protocols for data staging. It thus provides a simple and complete solution to high-throughput proteomics data analysis for inexperienced users through a convenient portal interface.
JF  - Cluster Computing and the Grid, IEEE International Symposium on
PB  - IEEE Computer Society
CY  - Los Alamitos, CA, USA
SN  - 978-0-7695-4039-9
ER  - 

TY  - CONF
T1  - Workflow Interoperability in a Grid Portal for Molecular Simulations
T2  - Proceedings of the International Workshop on Science Gateways (IWSG10)
Y1  - 2010
A1  - Gesing, Sandra
A1  - Marton, Istvan
A1  - Birkenheuer, Georg
A1  - Schuller, Bernd
A1  - Grunzke, Richard
A1  - Krüger, Jens
A1  - Breuers, Sebastian
A1  - Blunk, Dirk
A1  - Fels, Gregor
A1  - Packschies, Lars
A1  - Brinkmann, André
A1  - Kohlbacher, Oliver
A1  - Kozlovszky, Miklos
JF  - Proceedings of the International Workshop on Science Gateways (IWSG10)
PB  - Consorzio COMETA
ER  - 

TY  - JOUR
T1  - Simultaneous alignment of short reads against multiple genomes
JF  - Genome Biol
Y1  - 2009
A1  - Schneeberger, Korbinian
A1  - Hagmann, Jörg
A1  - Ossowski, Stephan
A1  - Warthmann, Norman
A1  - Gesing, Sandra
A1  - Kohlbacher, Oliver
A1  - Weigel, Detlef
VL  - 10
UR  - http://www.biomedsearch.com/nih/Simultaneous-alignment-short-reads-against/19761611.html
ER  -