TY - JOUR T1 - Validation and mismatch repair of workflows through typed data streams JF - Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences Y1 - 2011 A1 - Yaikhom, Gagarine A1 - Malcolm Atkinson A1 - van Hemert, Jano A1 - Oscar Corcho A1 - Krause, Amy AB - The type system of a language guarantees that all of the operations on a set of data comply with the rules and conditions set by the language. While language typing is a fundamental requirement for any programming language, the typing of data that flow between processing elements within a workflow is currently being treated as optional. In this paper, we introduce a three-level type system for typing workflow data streams. These types are parts of the Data Intensive System Process Engineering Language programming language, which empowers users with the ability to validate the connections inside a workflow composition, and apply appropriate data type conversions when necessary. Furthermore, this system enables the enactment engine in carrying out type-directed workflow optimizations. VL - 369 IS - 1949 ER - TY - Generic T1 - Federated Enactment of Workflow Patterns T2 - Lecture Notes in Computer Science Y1 - 2010 A1 - Yaikhom, Gagarine A1 - Liew, Chee A1 - Liangxiu Han A1 - van Hemert, Jano A1 - Malcolm Atkinson A1 - Krause, Amy ED - D’Ambra, Pasqua ED - Guarracino, Mario ED - Talia, Domenico AB - In this paper we address two research questions concerning workflows: 1) how do we abstract and catalogue recurring workflow patterns?; and 2) how do we facilitate optimisation of the mapping from workflow patterns to actual resources at runtime? Our aim here is to explore techniques that are applicable to large-scale workflow compositions, where the resources could change dynamically during the lifetime of an application. We achieve this by introducing a registry-based mechanism where pattern abstractions are catalogued and stored. In conjunction with an enactment engine, which communicates with this registry, concrete computational implementations and resources are assigned to these patterns, conditional to the execution parameters. Using a data mining application from the life sciences, we demonstrate this new approach. JF - Lecture Notes in Computer Science PB - Springer Berlin / Heidelberg VL - 6271 UR - http://dx.doi.org/10.1007/978-3-642-15277-1_31 N1 - 10.1007/978-3-642-15277-1_31 ER - TY - CONF T1 - OGSA-DAI: Middleware for Data Integration: Selected Applications T2 - ESCIENCE '08: Proceedings of the 2008 Fourth IEEE International Conference on eScience Y1 - 2008 A1 - Grant, Alistair A1 - Antonioletti, Mario A1 - Hume, Alastair C. A1 - Krause, Amy A1 - Dobrzelecki, Bartosz A1 - Jackson, Michael J. A1 - Parsons, Mark A1 - Atkinson, Malcolm P. A1 - Theocharopoulos, Elias JF - ESCIENCE '08: Proceedings of the 2008 Fourth IEEE International Conference on eScience PB - IEEE Computer Society CY - Washington, DC, USA SN - 978-0-7695-3535-7 ER - TY - CONF T1 - OGSA-DAI Status and Benchmarks T2 - All Hands Meeting 2005 Y1 - 2005 A1 - Antonioletti, Mario A1 - Malcolm Atkinson A1 - Rob Baxter A1 - Andrew Borle A1 - Hong, Neil P. Chue A1 - Patrick Dantressangle A1 - Hume, Alastair C. A1 - Mike Jackson A1 - Krause, Amy A1 - Laws, Simon A1 - Parsons, Mark A1 - Paton, Norman W. A1 - Jennifer M. Schopf A1 - Tom Sugden A1 - Watson, Paul AB - This paper presents a status report on some of the highlights that have taken place within the OGSADAI project since the last AHM. A description of Release 6.0 functionality and details of the forthcoming release, due in September 2005, is given. Future directions for this project are discussed. This paper also describes initial results of work being done to systematically benchmark recent OGSADAI releases. The OGSA-DAI software distribution, and more information about the project, is available from the project website at www.ogsadai.org.uk. JF - All Hands Meeting 2005 CY - Nottingham, UK ER - TY - CONF T1 - Experiences of Designing and Implementing Grid Database Services in the OGSA-DAI project T2 - Global Grid Forum Workshop on Designing and Building Grid Services/GGF9 Y1 - 2003 A1 - Antonioletti, Mario A1 - Neil Chue Hong A1 - Ally Hume A1 - Mike Jackson A1 - Krause, Amy A1 - Jeremy Nowell A1 - Charaka Palansuriya A1 - Tom Sugden A1 - Martin Westhead AB - This paper describes the experiences of the OGSA-DAI team in designing and building a database access layer using the OGSI and the emerging DAIS GGF recommendations. This middleware is designed for enabling other UK e-Science projects that require database access and providing the basic primitives for higher-level services such as Distributed Query Processing. OGSA-DAI also intends to produce one of the required reference implementations of the DAIS specification once this becomes a proposed recommendation and, until then, scope out their ideas, provide feedback as well as directly contributing to the GGF working group. This paper enumerates the issues that have arisen in tracking the DAIS and OGSI specifications whilst developing a software distribution using the Grid services model; trying to serve the needs of the various target communities; and using the Globus Toolkit OGSI core distribution. The OGSA-DAI software distribution and more details are available from the project web site at http://www.ogsadai.org.uk/. JF - Global Grid Forum Workshop on Designing and Building Grid Services/GGF9 CY - Chicago, USA ER -